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  "Title": "Deconvolute Mixed Genomes with Unknown Proportions",
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  "Description": "Traditional phasing programs are limited to diploid\norganisms. Our method modifies Li and Stephens algorithm with\nMarkov chain Monte Carlo (MCMC) approaches, and builds a\ngeneric framework that allows haplotype searches in a multiple\ninfection setting. This package is primarily developed as part\nof the Pf3k project, which is a global collaboration using the\nlatest sequencing technologies to provide a high-resolution\nview of natural variation in the malaria parasite Plasmodium\nfalciparum. Parasite DNA are extracted from patient blood\nsample, which often contains more than one parasite strain,\nwith unknown proportions. This package is used for\ndeconvoluting mixed haplotypes, and reporting the mixture\nproportions from each sample.",
  "URL": "https://github.com/DEploid-dev/DEploid-r",
  "BugReports": "https://github.com/DEploid-dev/DEploid-r/issues",
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  "Date": "2024-12-22",
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  "Date/Publication": "2025-01-21 04:56:27 UTC",
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    "message": "Merge pull request #83 from DEploid-dev/82_cran_new\n\nclose #82 update",
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  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "deconvoluting-mixed-genomes",
    "hmm",
    "malaria",
    "mcmc",
    "parasites",
    "phasing",
    "unknown-proportions",
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    "description": "DEploid development repositories. See README (https://github.com/DEploid-dev/README) for more details."
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DEploid"
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      "title": "Deconvolute mixed haplotypes",
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      "title": "Plot coverage",
      "topics": [
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    },
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      ]
    },
    {
      "page": "plotObsExpWSAFPlotly",
      "title": "Plot WSAF",
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        "plotObsExpWSAFPlotly"
      ]
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    {
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